Variant report

Variant	rs10885730
Chromosome Location	chr10:117281625-117281626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1005000	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs10509992	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10787584	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10885721	0.90[JPT][hapmap]
rs10885729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885738	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10885750	0.83[ASN][1000 genomes]
rs11197231	0.80[EUR][1000 genomes]
rs11197244	0.83[EUR][1000 genomes]
rs11197246	0.83[EUR][1000 genomes]
rs11197247	0.82[EUR][1000 genomes]
rs11197254	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11197258	0.96[CEU][hapmap]
rs11197259	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197261	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs11197264	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197268	0.84[JPT][hapmap]
rs11197269	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11197281	0.83[YRI][hapmap]
rs11197282	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11197286	0.96[CEU][hapmap]
rs11197293	0.92[CEU][hapmap]
rs11197317	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11197319	0.83[ASN][1000 genomes]
rs11197320	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11197321	0.83[ASN][1000 genomes]
rs11197322	0.83[ASN][1000 genomes]
rs11197323	0.83[ASN][1000 genomes]
rs11197324	0.83[ASN][1000 genomes]
rs11197325	0.83[ASN][1000 genomes]
rs11197326	0.83[ASN][1000 genomes]
rs11197337	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12259533	0.83[ASN][1000 genomes]
rs12259535	0.83[ASN][1000 genomes]
rs12360040	0.83[YRI][hapmap]
rs12765024	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12766723	0.82[EUR][1000 genomes]
rs12767028	0.83[EUR][1000 genomes]
rs12781537	0.80[EUR][1000 genomes]
rs1328008	0.82[CEU][hapmap]
rs1336117	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1410305	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1410306	0.83[ASN][1000 genomes]
rs1536648	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1572401	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1576148	0.83[ASN][1000 genomes]
rs1576149	0.83[ASN][1000 genomes]
rs1576150	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs1590733	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1590734	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1590736	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17724227	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs17802400	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1854243	0.83[ASN][1000 genomes]
rs1854244	0.83[ASN][1000 genomes]
rs2025912	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2149112	0.82[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2182862	0.90[EUR][1000 genomes]
rs2250483	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2250761	0.83[ASN][1000 genomes]
rs2420083	0.82[EUR][1000 genomes]
rs2420097	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2420098	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2769371	0.82[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769375	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769378	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2769388	0.83[ASN][1000 genomes]
rs2769391	0.83[ASN][1000 genomes]
rs2769392	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769393	0.83[ASN][1000 genomes]
rs2769394	0.83[ASN][1000 genomes]
rs2769395	0.83[ASN][1000 genomes]
rs2769396	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769397	0.83[ASN][1000 genomes]
rs2769398	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769400	0.83[ASN][1000 genomes]
rs2769401	0.83[ASN][1000 genomes]
rs2769403	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769405	0.83[ASN][1000 genomes]
rs2769406	0.83[ASN][1000 genomes]
rs2769408	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769409	0.83[ASN][1000 genomes]
rs2769412	0.83[ASN][1000 genomes]
rs2769413	0.83[ASN][1000 genomes]
rs2769415	0.83[ASN][1000 genomes]
rs2769416	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2769418	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2769421	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2769423	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2784811	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2784812	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804184	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804186	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804187	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804190	0.83[ASN][1000 genomes]
rs2804192	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804197	0.83[ASN][1000 genomes]
rs2804198	0.83[ASN][1000 genomes]
rs2804200	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804201	0.83[ASN][1000 genomes]
rs2804202	0.83[ASN][1000 genomes]
rs2804204	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804205	0.83[ASN][1000 genomes]
rs2804206	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804207	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2804212	0.83[ASN][1000 genomes]
rs2804213	0.83[ASN][1000 genomes]
rs2804214	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2804249	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs35594709	0.83[EUR][1000 genomes]
rs35875963	0.83[ASN][1000 genomes]
rs4612715	0.81[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]
rs67702987	0.81[EUR][1000 genomes]
rs7068521	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7071124	0.83[EUR][1000 genomes]
rs7083621	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7093703	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71484988	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7894126	0.83[ASN][1000 genomes]
rs7911480	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9420197	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117278000-117281800	Weak transcription	Aorta	Aorta
2	chr10:117281000-117282400	Weak transcription	Fetal Brain Female	brain

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