Variant report

Variant	rs10509991
Chromosome Location	chr10:117350560-117350561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1005000	0.93[CEU][hapmap]
rs10509992	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10787584	0.93[CEU][hapmap]
rs10885721	0.92[CEU][hapmap]
rs10885722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885738	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs10885746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885747	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885750	0.88[EUR][1000 genomes]
rs10885762	0.83[EUR][1000 genomes]
rs11197231	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11197233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197246	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11197247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197252	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197254	0.93[CEU][hapmap]
rs11197255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197258	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197261	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11197281	0.82[YRI][hapmap]
rs11197282	0.96[YRI][hapmap]
rs11197286	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197292	0.81[YRI][hapmap]
rs11197293	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197307	0.88[AMR][1000 genomes]
rs11197317	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs11197319	0.88[EUR][1000 genomes]
rs11197320	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11197321	0.89[EUR][1000 genomes]
rs11197322	0.89[EUR][1000 genomes]
rs11197323	0.89[EUR][1000 genomes]
rs11197324	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11197325	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11197326	0.87[EUR][1000 genomes]
rs11197337	0.96[CEU][hapmap]
rs11197342	0.85[EUR][1000 genomes]
rs11197343	0.85[EUR][1000 genomes]
rs11197344	0.85[EUR][1000 genomes]
rs11197345	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197346	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197369	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11492805	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11812371	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12259533	0.89[EUR][1000 genomes]
rs12259535	0.89[EUR][1000 genomes]
rs12356944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12360040	0.82[YRI][hapmap]
rs12764844	0.80[EUR][1000 genomes]
rs12765024	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs12767028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1328008	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs1336116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336117	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1410304	0.84[EUR][1000 genomes]
rs1410305	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1410306	0.81[EUR][1000 genomes]
rs1536648	0.93[CEU][hapmap];0.92[YRI][hapmap]
rs1572398	0.83[YRI][hapmap]
rs1572402	0.92[YRI][hapmap]
rs1576144	0.84[EUR][1000 genomes]
rs1576145	0.84[EUR][1000 genomes]
rs1576148	0.82[EUR][1000 genomes]
rs1576149	0.82[EUR][1000 genomes]
rs1576150	0.92[CEU][hapmap]
rs1581903	0.85[EUR][1000 genomes]
rs1581904	0.83[EUR][1000 genomes]
rs1590733	0.96[CEU][hapmap]
rs1590734	0.96[CEU][hapmap]
rs1590736	0.96[CEU][hapmap]
rs17093239	0.82[YRI][hapmap]
rs17093257	0.84[YRI][hapmap]
rs17093384	0.82[YRI][hapmap]
rs17802381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17802400	0.96[CEU][hapmap]
rs1854243	0.82[EUR][1000 genomes]
rs1854244	0.82[EUR][1000 genomes]
rs1927480	0.85[EUR][1000 genomes]
rs1981663	0.82[CHB][hapmap]
rs2025912	0.93[CEU][hapmap]
rs2068463	0.82[CHB][hapmap]
rs2149112	0.93[CEU][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes]
rs2250483	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2250761	0.80[EUR][1000 genomes]
rs2420091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2420095	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2420097	0.89[CEU][hapmap]
rs2420098	0.92[CEU][hapmap]
rs2532728	0.81[EUR][1000 genomes]
rs2532729	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2532731	0.84[EUR][1000 genomes]
rs2769371	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2769375	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2769378	0.96[CEU][hapmap]
rs2769388	0.87[EUR][1000 genomes]
rs2769391	0.89[EUR][1000 genomes]
rs2769392	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs2769393	0.88[EUR][1000 genomes]
rs2769394	0.89[EUR][1000 genomes]
rs2769395	0.89[EUR][1000 genomes]
rs2769396	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs2769397	0.89[EUR][1000 genomes]
rs2769398	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2769399	0.88[EUR][1000 genomes]
rs2769400	0.90[EUR][1000 genomes]
rs2769401	0.90[EUR][1000 genomes]
rs2769403	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2769405	0.90[EUR][1000 genomes]
rs2769406	0.90[EUR][1000 genomes]
rs2769408	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs2769409	0.90[EUR][1000 genomes]
rs2769412	0.90[EUR][1000 genomes]
rs2769413	0.90[EUR][1000 genomes]
rs2769415	0.89[EUR][1000 genomes]
rs2769416	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs2769418	0.92[CEU][hapmap]
rs2769419	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2769421	0.89[CEU][hapmap]
rs2769424	0.84[EUR][1000 genomes]
rs2784811	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2784812	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2804184	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2804186	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2804187	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2804190	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2804192	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2804197	0.90[EUR][1000 genomes]
rs2804198	0.90[EUR][1000 genomes]
rs2804200	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs2804201	0.89[EUR][1000 genomes]
rs2804202	0.88[EUR][1000 genomes]
rs2804204	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2804205	0.89[EUR][1000 genomes]
rs2804206	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs2804207	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2804212	0.89[EUR][1000 genomes]
rs2804213	0.88[EUR][1000 genomes]
rs2804214	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2804244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2804249	0.92[CEU][hapmap]
rs28414370	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2901056	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs35485324	0.83[EUR][1000 genomes]
rs35875963	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3858323	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4400711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4612715	0.92[CEU][hapmap]
rs4644580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6585333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6585346	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs67702987	0.84[ASN][1000 genomes]
rs7068521	0.93[CEU][hapmap];0.96[YRI][hapmap]
rs7071124	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7076416	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7083621	0.89[CEU][hapmap]
rs7089599	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7093703	0.88[CEU][hapmap]
rs7095798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894126	0.82[EUR][1000 genomes]
rs7911480	0.93[CEU][hapmap]
rs7913311	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs7922670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9420197	0.92[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117327800-117357200	Weak transcription	Aorta	Aorta
2	chr10:117350400-117352000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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