Variant report

Variant	rs2291669
Chromosome Location	chr10:117061793-117061794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10885688	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885699	0.91[CEU][hapmap];0.93[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap]
rs10885701	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885704	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11197095	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11197117	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11197120	0.91[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes]
rs11197124	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11197145	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197187	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197189	0.91[CEU][hapmap]
rs11197194	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197195	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197204	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11197205	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11197206	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11197208	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs11197212	0.91[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs11197213	0.91[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs11197216	0.86[EUR][1000 genomes]
rs11197217	0.86[EUR][1000 genomes]
rs12356495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12357741	0.91[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes]
rs12764552	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12770988	0.81[ASN][1000 genomes]
rs12780535	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2065719	0.90[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.83[ASN][1000 genomes]
rs2131835	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34373737	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873028	0.90[AMR][1000 genomes]
rs35107379	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35954673	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4509681	0.83[CEU][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117050600-117064000	Weak transcription	Aorta	Aorta
2	chr10:117050600-117079200	Weak transcription	Ovary	ovary
3	chr10:117053800-117064400	Weak transcription	Brain Germinal Matrix	brain
4	chr10:117054600-117062000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:117054600-117066200	Weak transcription	Fetal Brain Male	brain
6	chr10:117054800-117063200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:117055200-117075800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:117058200-117066200	Weak transcription	Fetal Kidney	kidney
9	chr10:117058800-117065600	Weak transcription	Fetal Brain Female	brain
10	chr10:117059000-117064200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:117059600-117062200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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