Variant report

Variant	rs11206693
Chromosome Location	chr1:56421290-56421291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10047042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12061238	1.00[AMR][1000 genomes]
rs12063400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497579	1.00[AMR][1000 genomes]
rs7552053	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11206693	ARHGAP32	trans	lymphoblastoid	seeQTL
rs11206693	SHE	trans	lymphoblastoid	seeQTL
rs11206693	FHL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56419400-56421400	Enhancers	NHDF-Ad	bronchial
2	chr1:56419400-56425200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56419600-56421400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56420600-56421400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:56420600-56421400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:56420800-56421400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:56420800-56421400	Enhancers	NHEK	skin
8	chr1:56420800-56421400	Enhancers	Osteobl	bone
9	chr1:56421000-56423200	Weak transcription	Fetal Lung	lung
10	chr1:56421000-56425000	Weak transcription	Placenta	Placenta
11	chr1:56421200-56421400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56421200-56421400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:56421200-56423000	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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