Variant report

Variant	rs28497579
Chromosome Location	chr1:56555264-56555265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10047042	1.00[AMR][1000 genomes]
rs11206693	1.00[AMR][1000 genomes]
rs11206734	1.00[AMR][1000 genomes]
rs11206742	1.00[AMR][1000 genomes]
rs11206755	1.00[AMR][1000 genomes]
rs11206763	1.00[AMR][1000 genomes]
rs12061238	1.00[AMR][1000 genomes]
rs12063400	1.00[AMR][1000 genomes]
rs12068842	1.00[AMR][1000 genomes]
rs12075753	1.00[AMR][1000 genomes]
rs12077310	1.00[AMR][1000 genomes]
rs12077704	1.00[AMR][1000 genomes]
rs12080318	1.00[AMR][1000 genomes]
rs12082866	1.00[AMR][1000 genomes]
rs12084027	1.00[AMR][1000 genomes]
rs12087929	1.00[AMR][1000 genomes]
rs12089996	1.00[AMR][1000 genomes]
rs12095619	1.00[AMR][1000 genomes]
rs12096541	1.00[AMR][1000 genomes]
rs12096574	1.00[AMR][1000 genomes]
rs12097090	1.00[AMR][1000 genomes]
rs12097616	1.00[AMR][1000 genomes]
rs7544069	1.00[AMR][1000 genomes]
rs7552053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56548800-56558600	Weak transcription	NHDF-Ad	bronchial
2	chr1:56555000-56555400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr1:56555000-56555400	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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