Variant report

Variant	rs12082866
Chromosome Location	chr1:56746061-56746062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11206734	1.00[AMR][1000 genomes]
rs11206742	1.00[AMR][1000 genomes]
rs11206755	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12061238	1.00[AMR][1000 genomes]
rs12068842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080318	1.00[AMR][1000 genomes]
rs12084027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087929	1.00[AMR][1000 genomes]
rs12089996	1.00[AMR][1000 genomes]
rs12095619	1.00[AMR][1000 genomes]
rs12096574	1.00[AMR][1000 genomes]
rs12097616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497579	1.00[AMR][1000 genomes]
rs58527246	1.00[AMR][1000 genomes]
rs59546270	1.00[AMR][1000 genomes]
rs60328132	1.00[AMR][1000 genomes]
rs60902969	1.00[AMR][1000 genomes]
rs61194392	1.00[AMR][1000 genomes]
rs72918349	1.00[AMR][1000 genomes]
rs72918380	1.00[AMR][1000 genomes]
rs7513784	1.00[AMR][1000 genomes]
rs7544069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56745400-56757000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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