Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206755	1.00[AMR][1000 genomes]
rs11206763	1.00[AMR][1000 genomes]
rs12061238	1.00[AMR][1000 genomes]
rs12063400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068842	1.00[AMR][1000 genomes]
rs12075753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077310	1.00[ASW][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs12077704	1.00[AMR][1000 genomes]
rs12080318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082866	1.00[AMR][1000 genomes]
rs12084027	1.00[AMR][1000 genomes]
rs12087929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097616	1.00[AMR][1000 genomes]
rs28497579	1.00[AMR][1000 genomes]
rs7513784	1.00[AMR][1000 genomes]
rs7544069	1.00[AMR][1000 genomes]
rs7552053	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56558600-56562400	Enhancers	Fetal Thymus	thymus
2	chr1:56558600-56562600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:56558600-56563000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56558600-56568000	Enhancers	NHDF-Ad	bronchial
5	chr1:56559000-56561200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:56559400-56561400	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:56559600-56561000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:56560000-56561200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56560600-56562200	Enhancers	Dnd41	blood
10	chr1:56560800-56561600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:56560800-56561600	Enhancers	Thymus	Thymus

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