Variant report

Variant	rs12075753
Chromosome Location	chr1:56470747-56470748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10047042	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206693	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206734	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206742	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206755	1.00[AMR][1000 genomes]
rs12061238	1.00[AMR][1000 genomes]
rs12063400	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068842	1.00[AMR][1000 genomes]
rs12077310	1.00[AMR][1000 genomes]
rs12080318	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084027	1.00[AMR][1000 genomes]
rs12087929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096541	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097090	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097616	1.00[AMR][1000 genomes]
rs28497579	1.00[AMR][1000 genomes]
rs7544069	1.00[AMR][1000 genomes]
rs7552053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56470000-56470800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:56470000-56471000	Enhancers	Primary hematopoietic stem cells	blood
3	chr1:56470000-56471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:56470400-56471000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:56470600-56470800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links