Variant report

Variant	rs7513784
Chromosome Location	chr1:56766994-56766995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11206742	1.00[AMR][1000 genomes]
rs11206755	1.00[AMR][1000 genomes]
rs11206763	1.00[AMR][1000 genomes]
rs12061238	1.00[AMR][1000 genomes]
rs12068842	1.00[AMR][1000 genomes]
rs12077310	1.00[AMR][1000 genomes]
rs12077704	1.00[AMR][1000 genomes]
rs12080318	1.00[AMR][1000 genomes]
rs12082866	1.00[AMR][1000 genomes]
rs12084027	1.00[AMR][1000 genomes]
rs12089996	1.00[AMR][1000 genomes]
rs12095619	1.00[AMR][1000 genomes]
rs12096574	1.00[AMR][1000 genomes]
rs12097616	1.00[AMR][1000 genomes]
rs58527246	1.00[AMR][1000 genomes]
rs59546270	1.00[AMR][1000 genomes]
rs60328132	1.00[AMR][1000 genomes]
rs60902969	1.00[AMR][1000 genomes]
rs61194392	1.00[AMR][1000 genomes]
rs72918349	1.00[AMR][1000 genomes]
rs72918380	1.00[AMR][1000 genomes]
rs72920407	1.00[AMR][1000 genomes]
rs7544069	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56757800-56786000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:56758000-56768000	Weak transcription	Right Ventricle	heart
3	chr1:56758600-56770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:56759800-56767600	Weak transcription	Aorta	Aorta
5	chr1:56759800-56768000	Weak transcription	Left Ventricle	heart
6	chr1:56763600-56767600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56763600-56767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56763800-56768200	Weak transcription	Fetal Heart	heart
9	chr1:56763800-56770400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:56764000-56767200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56764000-56767800	Weak transcription	Placenta	Placenta
12	chr1:56764000-56773400	Weak transcription	Psoas Muscle	Psoas
13	chr1:56765200-56795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:56765600-56769200	Weak transcription	Ovary	ovary
15	chr1:56765800-56775000	Weak transcription	HepG2	liver
16	chr1:56766200-56767800	Weak transcription	Fetal Intestine Large	intestine
17	chr1:56766200-56767800	Weak transcription	Fetal Intestine Small	intestine
18	chr1:56766600-56769000	Enhancers	HUVEC	blood vessel
19	chr1:56766600-56770000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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