Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56820474..56822108-chr1:56824348..56827534,3	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10888966	1.00[EUR][1000 genomes]
rs11206755	1.00[AMR][1000 genomes]
rs11206763	1.00[AMR][1000 genomes]
rs11799457	0.87[AFR][1000 genomes]
rs11809768	1.00[AFR][1000 genomes]
rs12068842	1.00[AMR][1000 genomes]
rs12077310	1.00[AMR][1000 genomes]
rs12077704	1.00[AMR][1000 genomes]
rs12082866	1.00[AMR][1000 genomes]
rs12084027	1.00[AMR][1000 genomes]
rs12097616	1.00[AMR][1000 genomes]
rs12564902	1.00[AFR][1000 genomes]
rs17113650	1.00[EUR][1000 genomes]
rs17114018	1.00[EUR][1000 genomes]
rs56061713	0.85[AFR][1000 genomes]
rs56067074	0.85[AFR][1000 genomes]
rs58527246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59546270	1.00[AMR][1000 genomes]
rs60328132	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61194392	1.00[AMR][1000 genomes]
rs6670641	1.00[EUR][1000 genomes]
rs72660490	0.89[AFR][1000 genomes]
rs72662232	0.89[AFR][1000 genomes]
rs72918349	1.00[AMR][1000 genomes]
rs72918380	1.00[AMR][1000 genomes]
rs72920407	1.00[AMR][1000 genomes]
rs74076306	1.00[EUR][1000 genomes]
rs74076324	1.00[EUR][1000 genomes]
rs7513784	1.00[AMR][1000 genomes]
rs7544069	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56820600-56825400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:56820600-56826400	Enhancers	Fetal Muscle Leg	muscle
3	chr1:56821400-56824800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:56822000-56825400	Enhancers	Psoas Muscle	Psoas
5	chr1:56822800-56825400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:56823200-56825000	Weak transcription	Right Atrium	heart
7	chr1:56823600-56825000	Enhancers	HSMMtube	muscle
8	chr1:56823800-56828000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:56824200-56829000	Weak transcription	Left Ventricle	heart
10	chr1:56824400-56824800	Weak transcription	Fetal Heart	heart
11	chr1:56824400-56828000	Weak transcription	Fetal Kidney	kidney

Quick Search: