Variant report

Variant	rs11809768
Chromosome Location	chr1:56822643-56822644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11799457	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11803744	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11811596	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12064855	0.94[ASN][1000 genomes]
rs12067784	0.94[ASN][1000 genomes]
rs12090289	0.89[ASN][1000 genomes]
rs12097108	0.89[ASN][1000 genomes]
rs12563026	0.89[ASN][1000 genomes]
rs12564902	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12566405	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12567265	0.94[ASN][1000 genomes]
rs12569169	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34846848	0.91[ASN][1000 genomes]
rs55791695	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55896510	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56061713	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56067074	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56164989	0.91[ASN][1000 genomes]
rs56314028	0.80[EUR][1000 genomes]
rs57024161	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58527246	0.96[AFR][1000 genomes]
rs60307274	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60328132	0.91[AFR][1000 genomes]
rs60902969	1.00[AFR][1000 genomes]
rs6666711	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6696992	0.80[EUR][1000 genomes]
rs72660490	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660491	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660493	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660494	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660496	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660497	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660498	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660499	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660502	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72662204	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72662205	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72662206	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72662207	0.94[ASN][1000 genomes]
rs72662213	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72662214	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72662217	0.94[ASN][1000 genomes]
rs72662227	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72662230	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72662232	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72662235	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56820600-56825400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:56820600-56826400	Enhancers	Fetal Muscle Leg	muscle
3	chr1:56821400-56824400	Enhancers	Fetal Heart	heart
4	chr1:56821400-56824800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:56821800-56822800	Enhancers	Placenta	Placenta
6	chr1:56822000-56822800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr1:56822000-56823200	Enhancers	Right Atrium	heart
8	chr1:56822000-56823800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:56822000-56824200	Enhancers	Left Ventricle	heart
10	chr1:56822000-56825400	Enhancers	Psoas Muscle	Psoas
11	chr1:56822200-56823400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:56822400-56823600	Weak transcription	Right Ventricle	heart
13	chr1:56822400-56823600	Weak transcription	HSMMtube	muscle

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