Variant report

Variant	rs55896510
Chromosome Location	chr1:56854411-56854412
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11799457	0.83[ASN][1000 genomes]
rs11803744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809768	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11811596	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12064855	0.81[ASN][1000 genomes]
rs12067784	0.81[ASN][1000 genomes]
rs12090289	0.86[ASN][1000 genomes]
rs12097108	0.86[ASN][1000 genomes]
rs12563026	0.86[ASN][1000 genomes]
rs12564902	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12567265	0.81[ASN][1000 genomes]
rs34846848	0.83[ASN][1000 genomes]
rs55791695	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56061713	0.83[ASN][1000 genomes]
rs56067074	0.83[ASN][1000 genomes]
rs56164989	0.83[ASN][1000 genomes]
rs56314028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57024161	0.83[ASN][1000 genomes]
rs60307274	0.83[ASN][1000 genomes]
rs6666711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72660490	0.83[ASN][1000 genomes]
rs72660491	0.83[ASN][1000 genomes]
rs72660493	0.83[ASN][1000 genomes]
rs72660494	0.83[ASN][1000 genomes]
rs72660496	0.83[ASN][1000 genomes]
rs72660497	0.83[ASN][1000 genomes]
rs72660498	0.83[ASN][1000 genomes]
rs72660499	0.83[ASN][1000 genomes]
rs72660502	0.83[ASN][1000 genomes]
rs72662204	0.83[ASN][1000 genomes]
rs72662205	0.83[ASN][1000 genomes]
rs72662206	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72662207	0.81[ASN][1000 genomes]
rs72662213	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72662214	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662217	0.81[ASN][1000 genomes]
rs72662227	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56840000-56862400	Weak transcription	Gastric	stomach
2	chr1:56842400-56862400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:56842600-56859800	Weak transcription	Right Ventricle	heart
4	chr1:56843000-56861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:56844000-56855800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:56844200-56857800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56845400-56856000	Weak transcription	HepG2	liver
8	chr1:56850000-56857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:56851200-56856000	Weak transcription	Fetal Heart	heart
10	chr1:56853000-56855600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:56853400-56854600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:56853400-56855400	Weak transcription	Left Ventricle	heart
13	chr1:56853400-56855600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:56853400-56855600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:56853400-56855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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