Variant report

Variant	rs11811596
Chromosome Location	chr1:56838183-56838184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11799457	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11803744	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11809768	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12064855	0.86[ASN][1000 genomes]
rs12067784	0.86[ASN][1000 genomes]
rs12090289	0.91[ASN][1000 genomes]
rs12097108	0.91[ASN][1000 genomes]
rs12563026	0.91[ASN][1000 genomes]
rs12564902	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12566405	0.85[ASN][1000 genomes]
rs12567265	0.86[ASN][1000 genomes]
rs12569169	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34846848	0.88[ASN][1000 genomes]
rs55791695	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55896510	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56061713	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56067074	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56164989	0.88[ASN][1000 genomes]
rs56314028	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57024161	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60307274	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6666711	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6696992	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660490	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660491	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660493	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660494	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660496	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660497	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660498	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660499	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660502	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662204	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662205	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662207	0.86[ASN][1000 genomes]
rs72662213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662217	0.86[ASN][1000 genomes]
rs72662227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662230	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662232	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662235	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv508204	chr1:56830844-56840857	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv1005520	chr1:56831042-56839645	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56825400-56839000	Weak transcription	Psoas Muscle	Psoas
2	chr1:56836200-56839800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:56836400-56838400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:56836800-56840600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:56837000-56840000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:56837000-56840000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:56837000-56840200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:56837000-56840200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:56837000-56840200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:56837000-56840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:56837000-56840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:56837000-56840600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:56837200-56839800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:56837200-56839800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:56837200-56839800	Weak transcription	Left Ventricle	heart
16	chr1:56837200-56839800	Weak transcription	Right Ventricle	heart
17	chr1:56837200-56840400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:56837200-56840400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:56837200-56840400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:56837200-56842200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:56837200-56842400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:56837800-56839000	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:56837800-56839600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:56838000-56838200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:56838000-56838200	Enhancers	Brain Germinal Matrix	brain
26	chr1:56838000-56838200	Enhancers	Fetal Stomach	stomach
27	chr1:56838000-56839000	Enhancers	Fetal Lung	lung
28	chr1:56838000-56839200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr1:56838000-56839600	Enhancers	Fetal Heart	heart

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