Variant report

Variant	rs11799457
Chromosome Location	chr1:56803162-56803163
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11803744	0.83[ASN][1000 genomes]
rs11809768	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11811596	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12064855	0.91[ASN][1000 genomes]
rs12067784	0.91[ASN][1000 genomes]
rs12090289	0.91[ASN][1000 genomes]
rs12097108	0.91[ASN][1000 genomes]
rs12563026	0.91[ASN][1000 genomes]
rs12564902	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12566405	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12567265	0.91[ASN][1000 genomes]
rs12569169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34846848	1.00[ASN][1000 genomes]
rs55791695	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55896510	0.83[ASN][1000 genomes]
rs56061713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56067074	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56164989	1.00[ASN][1000 genomes]
rs57024161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58527246	0.91[AFR][1000 genomes]
rs60307274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60902969	0.87[AFR][1000 genomes]
rs6666711	0.83[ASN][1000 genomes]
rs72660490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662206	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662207	0.91[ASN][1000 genomes]
rs72662213	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662214	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662217	0.91[ASN][1000 genomes]
rs72662227	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662230	0.83[ASN][1000 genomes]
rs72662232	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72662235	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1015037	chr1:56784322-56814739	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56787000-56805600	Weak transcription	Left Ventricle	heart
2	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
3	chr1:56797800-56805600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:56798400-56807800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:56799200-56804200	Enhancers	Placenta	Placenta
6	chr1:56800000-56803600	Weak transcription	HepG2	liver
7	chr1:56800000-56805600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:56801800-56805000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:56801800-56805600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:56801800-56805600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:56802400-56805000	Weak transcription	Pancreas	Pancrea
12	chr1:56802400-56805000	Weak transcription	Psoas Muscle	Psoas
13	chr1:56802400-56805200	Enhancers	NHDF-Ad	bronchial
14	chr1:56803000-56803600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:56803000-56803600	Enhancers	NHLF	lung

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