Variant report

Variant	rs12564902
Chromosome Location	chr1:56830568-56830569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11799457	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11803744	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11809768	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11811596	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12064855	0.91[ASN][1000 genomes]
rs12067784	0.91[ASN][1000 genomes]
rs12090289	0.97[ASN][1000 genomes]
rs12097108	0.97[ASN][1000 genomes]
rs12563026	0.97[ASN][1000 genomes]
rs12566405	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12567265	0.91[ASN][1000 genomes]
rs12569169	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34846848	0.94[ASN][1000 genomes]
rs55791695	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55896510	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56061713	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56067074	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56164989	0.94[ASN][1000 genomes]
rs56314028	0.80[EUR][1000 genomes]
rs57024161	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58527246	0.96[AFR][1000 genomes]
rs60307274	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60328132	0.91[AFR][1000 genomes]
rs60902969	1.00[AFR][1000 genomes]
rs6666711	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6696992	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72660490	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660491	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660493	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660494	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660496	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660497	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660498	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660499	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660502	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662204	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662205	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662206	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662207	0.91[ASN][1000 genomes]
rs72662213	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662214	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662217	0.91[ASN][1000 genomes]
rs72662227	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662230	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662232	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662235	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3509488	chr1:56829121-56835877	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3344758	chr1:56830514-56836162	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56825400-56839000	Weak transcription	Psoas Muscle	Psoas
2	chr1:56829800-56830800	Weak transcription	HepG2	liver

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