Variant report

Variant	rs72662207
Chromosome Location	chr1:56808375-56808376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11206801	0.92[EUR][1000 genomes]
rs11799457	0.91[ASN][1000 genomes]
rs11803744	0.81[ASN][1000 genomes]
rs11809768	0.94[ASN][1000 genomes]
rs11811596	0.86[ASN][1000 genomes]
rs12064446	0.89[AMR][1000 genomes]
rs12064855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067824	0.89[AMR][1000 genomes]
rs12090289	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12097108	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12563026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12564902	0.91[ASN][1000 genomes]
rs12566405	0.89[ASN][1000 genomes]
rs12567265	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569169	0.89[ASN][1000 genomes]
rs17113792	0.89[AMR][1000 genomes]
rs17113795	0.82[AMR][1000 genomes]
rs28445007	0.82[AMR][1000 genomes]
rs28631406	0.82[AMR][1000 genomes]
rs34846848	0.91[ASN][1000 genomes]
rs4269809	0.93[EUR][1000 genomes]
rs4353140	0.93[EUR][1000 genomes]
rs4431886	0.93[EUR][1000 genomes]
rs55791695	0.97[ASN][1000 genomes]
rs55896510	0.81[ASN][1000 genomes]
rs56061713	0.91[ASN][1000 genomes]
rs56067074	0.91[ASN][1000 genomes]
rs56164989	0.91[ASN][1000 genomes]
rs57024161	0.91[ASN][1000 genomes]
rs60307274	0.91[ASN][1000 genomes]
rs6666711	0.81[ASN][1000 genomes]
rs6690394	0.92[EUR][1000 genomes]
rs72660490	0.91[ASN][1000 genomes]
rs72660491	0.91[ASN][1000 genomes]
rs72660493	0.91[ASN][1000 genomes]
rs72660494	0.91[ASN][1000 genomes]
rs72660496	0.91[ASN][1000 genomes]
rs72660497	0.91[ASN][1000 genomes]
rs72660498	0.91[ASN][1000 genomes]
rs72660499	0.91[ASN][1000 genomes]
rs72660502	0.91[ASN][1000 genomes]
rs72662204	0.91[ASN][1000 genomes]
rs72662205	0.91[ASN][1000 genomes]
rs72662206	0.83[ASN][1000 genomes]
rs72662213	0.97[ASN][1000 genomes]
rs72662214	0.91[ASN][1000 genomes]
rs72662217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662227	0.86[ASN][1000 genomes]
rs72662230	0.81[ASN][1000 genomes]
rs72662232	0.81[ASN][1000 genomes]
rs72662235	0.81[ASN][1000 genomes]
rs7546727	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1015037	chr1:56784322-56814739	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
2	chr1:56806800-56818400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:56807600-56809000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:56808000-56808400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:56808000-56808600	Enhancers	Psoas Muscle	Psoas
6	chr1:56808200-56808400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56808200-56808400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:56808200-56808600	Enhancers	Gastric	stomach

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