Variant report

Variant	rs72662230
Chromosome Location	chr1:56845149-56845150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr1:56839169-56846366	SK-N-SH	brain:	n/a	chr1:56839904-56839918 chr1:56840249-56840261

Variant related genes	Relation type
ENSG00000223307	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11799457	0.83[ASN][1000 genomes]
rs11803744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809768	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11811596	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12064855	0.81[ASN][1000 genomes]
rs12067784	0.81[ASN][1000 genomes]
rs12090289	0.86[ASN][1000 genomes]
rs12097108	0.86[ASN][1000 genomes]
rs12563026	0.86[ASN][1000 genomes]
rs12564902	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12567265	0.81[ASN][1000 genomes]
rs34846848	0.83[ASN][1000 genomes]
rs55791695	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55896510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56061713	0.83[ASN][1000 genomes]
rs56067074	0.83[ASN][1000 genomes]
rs56164989	0.83[ASN][1000 genomes]
rs56314028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57024161	0.83[ASN][1000 genomes]
rs60307274	0.83[ASN][1000 genomes]
rs6666711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72660490	0.83[ASN][1000 genomes]
rs72660491	0.83[ASN][1000 genomes]
rs72660493	0.83[ASN][1000 genomes]
rs72660494	0.83[ASN][1000 genomes]
rs72660496	0.83[ASN][1000 genomes]
rs72660497	0.83[ASN][1000 genomes]
rs72660498	0.83[ASN][1000 genomes]
rs72660499	0.83[ASN][1000 genomes]
rs72660502	0.83[ASN][1000 genomes]
rs72662204	0.83[ASN][1000 genomes]
rs72662205	0.83[ASN][1000 genomes]
rs72662206	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72662207	0.81[ASN][1000 genomes]
rs72662213	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72662214	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662217	0.81[ASN][1000 genomes]
rs72662227	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662235	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56839200-56846800	Enhancers	Fetal Stomach	stomach
2	chr1:56840000-56862400	Weak transcription	Gastric	stomach
3	chr1:56842400-56862400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:56842600-56849800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:56842600-56850600	Weak transcription	NHDF-Ad	bronchial
6	chr1:56842600-56859800	Weak transcription	Right Ventricle	heart
7	chr1:56842800-56848800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:56843000-56861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:56843600-56846400	Weak transcription	Right Atrium	heart
10	chr1:56843800-56846000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56843800-56846000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:56844000-56855800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:56844200-56857800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:56844400-56845200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:56844400-56845400	Enhancers	HepG2	liver
16	chr1:56844600-56846000	Weak transcription	Fetal Lung	lung
17	chr1:56844600-56853000	Weak transcription	Left Ventricle	heart
18	chr1:56844800-56845200	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:56844800-56845400	Weak transcription	Fetal Kidney	kidney
20	chr1:56844800-56845800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:56845000-56846200	Weak transcription	Fetal Muscle Leg	muscle

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