Variant report

Variant	rs6696992
Chromosome Location	chr1:56855814-56855815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11803744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11809768	0.80[EUR][1000 genomes]
rs11811596	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12090289	0.83[ASN][1000 genomes]
rs12097108	0.83[ASN][1000 genomes]
rs12563026	0.83[ASN][1000 genomes]
rs12564902	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55791695	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55896510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56314028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6666711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72662206	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72662213	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72662214	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662227	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72662230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72662232	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72662235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56840000-56862400	Weak transcription	Gastric	stomach
2	chr1:56842400-56862400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:56842600-56859800	Weak transcription	Right Ventricle	heart
4	chr1:56843000-56861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:56844200-56857800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:56845400-56856000	Weak transcription	HepG2	liver
7	chr1:56850000-56857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:56851200-56856000	Weak transcription	Fetal Heart	heart
9	chr1:56854600-56856000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:56854800-56856000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:56855200-56856000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:56855400-56856200	Enhancers	Fetal Intestine Small	intestine
13	chr1:56855400-56856400	Enhancers	Left Ventricle	heart
14	chr1:56855600-56856000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:56855600-56856000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:56855600-56856000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:56855600-56856000	Enhancers	Stomach Mucosa	stomach
18	chr1:56855600-56856200	Enhancers	Fetal Intestine Large	intestine
19	chr1:56855600-56856200	Enhancers	Fetal Muscle Leg	muscle
20	chr1:56855600-56856400	Enhancers	Placenta	Placenta
21	chr1:56855600-56856800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr1:56855600-56857600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:56855800-56856000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:56855800-56856000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr1:56855800-56856200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr1:56855800-56857000	Weak transcription	H1 Cell Line	embryonic stem cell

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