Variant report

Variant	rs72662206
Chromosome Location	chr1:56808198-56808199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11799457	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11803744	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11809768	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11811596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064855	0.83[ASN][1000 genomes]
rs12067784	0.83[ASN][1000 genomes]
rs12090289	0.83[ASN][1000 genomes]
rs12097108	0.83[ASN][1000 genomes]
rs12563026	0.83[ASN][1000 genomes]
rs12564902	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12566405	0.81[ASN][1000 genomes]
rs12567265	0.83[ASN][1000 genomes]
rs12569169	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34846848	0.85[ASN][1000 genomes]
rs55791695	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55896510	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56061713	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56067074	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56164989	0.85[ASN][1000 genomes]
rs56314028	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57024161	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60307274	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6666711	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6696992	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72660490	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660491	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660493	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660494	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660496	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660497	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660498	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660499	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660502	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662204	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662205	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662207	0.83[ASN][1000 genomes]
rs72662213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662217	0.83[ASN][1000 genomes]
rs72662227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662230	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72662232	0.80[EUR][1000 genomes]
rs72662235	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1015037	chr1:56784322-56814739	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
2	chr1:56806400-56808200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56806800-56818400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:56807600-56809000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:56808000-56808400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:56808000-56808600	Enhancers	Psoas Muscle	Psoas

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