Variant report

Variant	rs55791695
Chromosome Location	chr1:56824449-56824450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56820474..56822108-chr1:56824348..56827534,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11799457	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11803744	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11809768	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11811596	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12064855	0.97[ASN][1000 genomes]
rs12067784	0.97[ASN][1000 genomes]
rs12090289	0.91[ASN][1000 genomes]
rs12097108	0.91[ASN][1000 genomes]
rs12563026	0.91[ASN][1000 genomes]
rs12564902	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12566405	0.91[ASN][1000 genomes]
rs12567265	0.97[ASN][1000 genomes]
rs12569169	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34846848	0.94[ASN][1000 genomes]
rs55896510	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56061713	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56067074	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56164989	0.94[ASN][1000 genomes]
rs56314028	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57024161	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60307274	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6666711	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6696992	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72660490	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660491	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660493	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660494	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660496	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660497	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660498	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660499	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72660502	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662204	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662205	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662206	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72662207	0.97[ASN][1000 genomes]
rs72662213	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662214	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662217	0.97[ASN][1000 genomes]
rs72662227	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662230	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72662232	0.83[ASN][1000 genomes]
rs72662235	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56820600-56825400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:56820600-56826400	Enhancers	Fetal Muscle Leg	muscle
3	chr1:56821400-56824800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:56822000-56825400	Enhancers	Psoas Muscle	Psoas
5	chr1:56822800-56825400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:56823200-56825000	Weak transcription	Right Atrium	heart
7	chr1:56823600-56825000	Enhancers	HSMMtube	muscle
8	chr1:56823800-56828000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:56824200-56829000	Weak transcription	Left Ventricle	heart
10	chr1:56824400-56824800	Weak transcription	Fetal Heart	heart
11	chr1:56824400-56828000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links