Variant report

Variant	rs72662227
Chromosome Location	chr1:56841419-56841420
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11799457	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11803744	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11809768	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11811596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12064855	0.86[ASN][1000 genomes]
rs12067784	0.86[ASN][1000 genomes]
rs12090289	0.86[ASN][1000 genomes]
rs12097108	0.86[ASN][1000 genomes]
rs12563026	0.86[ASN][1000 genomes]
rs12564902	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12566405	0.85[ASN][1000 genomes]
rs12567265	0.86[ASN][1000 genomes]
rs12569169	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34846848	0.88[ASN][1000 genomes]
rs55791695	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55896510	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56061713	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56067074	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56164989	0.88[ASN][1000 genomes]
rs56314028	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57024161	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60307274	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6666711	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6696992	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72660490	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660491	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660493	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660494	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660496	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660497	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660498	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660499	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72660502	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662204	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662205	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662207	0.86[ASN][1000 genomes]
rs72662213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662217	0.86[ASN][1000 genomes]
rs72662230	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662232	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662235	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56837200-56842200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:56837200-56842400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:56839000-56845000	Enhancers	Fetal Muscle Leg	muscle
4	chr1:56839200-56842800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:56839200-56846800	Enhancers	Fetal Stomach	stomach
6	chr1:56839400-56842600	Enhancers	NHDF-Ad	bronchial
7	chr1:56839400-56842800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:56839400-56843000	Enhancers	Adipose Nuclei	Adipose
9	chr1:56839400-56844600	Enhancers	Fetal Lung	lung
10	chr1:56839400-56844800	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:56839600-56842600	Enhancers	HSMM	muscle
12	chr1:56839600-56842600	Enhancers	HSMMtube	muscle
13	chr1:56839600-56842800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:56839600-56843800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:56839600-56844200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:56839600-56844800	Enhancers	Colon Smooth Muscle	Colon
17	chr1:56839800-56841600	Enhancers	Left Ventricle	heart
18	chr1:56839800-56842600	Enhancers	NH-A	brain
19	chr1:56839800-56843800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:56839800-56844600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:56840000-56842200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:56840000-56842200	Enhancers	Stomach Smooth Muscle	stomach
23	chr1:56840000-56843400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:56840000-56843800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr1:56840000-56844800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr1:56840000-56862400	Weak transcription	Gastric	stomach
27	chr1:56840200-56841600	Enhancers	Fetal Thymus	thymus
28	chr1:56840200-56842000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:56840200-56842200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr1:56840200-56842400	Weak transcription	Lung	lung
31	chr1:56840200-56842400	Enhancers	A549	lung
32	chr1:56840200-56842800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:56840200-56843400	Weak transcription	Colonic Mucosa	Colon
34	chr1:56840200-56843600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr1:56840200-56843600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr1:56840200-56844400	Enhancers	Fetal Heart	heart
37	chr1:56840200-56845000	Enhancers	Brain Germinal Matrix	brain
38	chr1:56840400-56841600	Enhancers	Psoas Muscle	Psoas
39	chr1:56840400-56841800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:56840400-56842000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:56840400-56842200	Enhancers	HMEC	breast
42	chr1:56840400-56842400	Weak transcription	Brain Substantia Nigra	brain
43	chr1:56840400-56842600	Enhancers	Osteobl	bone
44	chr1:56840400-56843200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr1:56840400-56843800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:56840400-56843800	Weak transcription	Brain Anterior Caudate	brain
47	chr1:56840600-56842200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:56840600-56842400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:56840600-56842600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:56840800-56841800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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