Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11206802	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12064446	0.83[EUR][1000 genomes]
rs12064855	0.93[EUR][1000 genomes]
rs12067784	0.95[EUR][1000 genomes]
rs12067824	0.83[EUR][1000 genomes]
rs12090289	0.95[EUR][1000 genomes]
rs12097108	0.95[EUR][1000 genomes]
rs12563026	0.95[EUR][1000 genomes]
rs12567265	0.94[EUR][1000 genomes]
rs17113792	0.84[EUR][1000 genomes]
rs17113795	0.84[EUR][1000 genomes]
rs17113799	1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs28445007	0.84[EUR][1000 genomes]
rs28631406	0.84[EUR][1000 genomes]
rs4269809	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4353140	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373790	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4431886	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690394	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662207	0.92[EUR][1000 genomes]
rs72662217	0.95[EUR][1000 genomes]
rs7539724	0.84[EUR][1000 genomes]
rs7546727	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553068	1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Cerebrospinal AB1-42 levels	20932310	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11206801	SCP2	cis	cerebellum	SCAN
rs11206801	SSBP3	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56840000-56862400	Weak transcription	Gastric	stomach
2	chr1:56842400-56862400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:56842600-56859800	Weak transcription	Right Ventricle	heart
4	chr1:56843000-56861800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:56844000-56855800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:56844200-56857800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56844600-56853000	Weak transcription	Left Ventricle	heart
8	chr1:56845400-56856000	Weak transcription	HepG2	liver
9	chr1:56850000-56857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:56850400-56851400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56850600-56851000	Weak transcription	Fetal Heart	heart
12	chr1:56850600-56851400	Enhancers	NHDF-Ad	bronchial

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