Variant report

Variant	rs17113795
Chromosome Location	chr1:56840459-56840460
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11206793	0.93[EUR][1000 genomes]
rs11206801	0.84[EUR][1000 genomes]
rs11206802	1.00[EUR][1000 genomes]
rs12023969	1.00[ASN][1000 genomes]
rs12064446	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064855	0.82[AMR][1000 genomes]
rs12067784	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12067824	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079898	1.00[ASN][1000 genomes]
rs12090289	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12097108	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12563026	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12567265	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17113792	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113799	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28445007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28631406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269809	0.83[EUR][1000 genomes]
rs4353140	0.83[EUR][1000 genomes]
rs4373790	1.00[EUR][1000 genomes]
rs4431886	0.83[EUR][1000 genomes]
rs6690394	0.84[EUR][1000 genomes]
rs72662207	0.82[AMR][1000 genomes]
rs72662217	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7539724	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546727	0.83[EUR][1000 genomes]
rs7553068	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv508204	chr1:56830844-56840857	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56836800-56840600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:56837000-56840600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:56837200-56842200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:56837200-56842400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:56839000-56840600	Enhancers	Fetal Muscle Trunk	muscle
6	chr1:56839000-56845000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:56839200-56842800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56839200-56846800	Enhancers	Fetal Stomach	stomach
9	chr1:56839400-56840800	Enhancers	NHLF	lung
10	chr1:56839400-56841200	Enhancers	Fetal Intestine Small	intestine
11	chr1:56839400-56842600	Enhancers	NHDF-Ad	bronchial
12	chr1:56839400-56842800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:56839400-56843000	Enhancers	Adipose Nuclei	Adipose
14	chr1:56839400-56844600	Enhancers	Fetal Lung	lung
15	chr1:56839400-56844800	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:56839600-56840800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr1:56839600-56840800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr1:56839600-56842600	Enhancers	HSMM	muscle
19	chr1:56839600-56842600	Enhancers	HSMMtube	muscle
20	chr1:56839600-56842800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:56839600-56843800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr1:56839600-56844200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr1:56839600-56844800	Enhancers	Colon Smooth Muscle	Colon
24	chr1:56839800-56840600	Enhancers	Right Atrium	heart
25	chr1:56839800-56840800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:56839800-56840800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:56839800-56840800	Enhancers	Placenta	Placenta
28	chr1:56839800-56840800	Enhancers	Ovary	ovary
29	chr1:56839800-56841000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:56839800-56841200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:56839800-56841200	Enhancers	Fetal Intestine Large	intestine
32	chr1:56839800-56841200	Enhancers	Right Ventricle	heart
33	chr1:56839800-56841400	Enhancers	Aorta	Aorta
34	chr1:56839800-56841600	Enhancers	Left Ventricle	heart
35	chr1:56839800-56842600	Enhancers	NH-A	brain
36	chr1:56839800-56843800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr1:56839800-56844600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:56840000-56840800	Enhancers	Brain Hippocampus Middle	brain
39	chr1:56840000-56840800	Enhancers	Duodenum Mucosa	Duodenum
40	chr1:56840000-56840800	Enhancers	HepG2	liver
41	chr1:56840000-56842200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr1:56840000-56842200	Enhancers	Stomach Smooth Muscle	stomach
43	chr1:56840000-56843400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:56840000-56843800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr1:56840000-56844800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr1:56840000-56862400	Weak transcription	Gastric	stomach
47	chr1:56840200-56840800	Enhancers	H9 Cell Line	embryonic stem cell
48	chr1:56840200-56841600	Enhancers	Fetal Thymus	thymus
49	chr1:56840200-56842000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr1:56840200-56842200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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