Variant report

Variant	rs12064446
Chromosome Location	chr1:56818670-56818671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11206793	0.95[EUR][1000 genomes]
rs11206801	0.83[EUR][1000 genomes]
rs11206802	0.99[EUR][1000 genomes]
rs12023969	1.00[ASN][1000 genomes]
rs12064855	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12067784	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12067824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079898	1.00[ASN][1000 genomes]
rs12090289	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12097108	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12563026	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12567265	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17113792	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113795	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113799	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28445007	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28631406	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269809	0.82[EUR][1000 genomes]
rs4353140	0.82[EUR][1000 genomes]
rs4373790	0.99[EUR][1000 genomes]
rs4431886	0.82[EUR][1000 genomes]
rs6690394	0.83[EUR][1000 genomes]
rs72662207	0.89[AMR][1000 genomes]
rs72662217	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7539724	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7546727	0.82[EUR][1000 genomes]
rs7553068	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
2	chr1:56818400-56819000	Enhancers	Psoas Muscle	Psoas
3	chr1:56818600-56819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:56818600-56820600	Weak transcription	Left Ventricle	heart

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