Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10157697	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10465804	0.91[EUR][1000 genomes]
rs11579447	0.90[CEU][hapmap]
rs11582185	0.88[EUR][1000 genomes]
rs11584589	0.87[EUR][1000 genomes]
rs11587264	0.91[EUR][1000 genomes]
rs11811483	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12565004	0.91[EUR][1000 genomes]
rs12566630	0.91[EUR][1000 genomes]
rs12567616	0.89[EUR][1000 genomes]
rs17372453	0.91[EUR][1000 genomes]
rs232826	0.80[JPT][hapmap]
rs2407019	0.91[EUR][1000 genomes]
rs56011712	0.91[EUR][1000 genomes]
rs57043686	0.91[EUR][1000 genomes]
rs57925801	0.91[EUR][1000 genomes]
rs72674199	0.91[EUR][1000 genomes]
rs72676705	0.91[EUR][1000 genomes]
rs72676710	0.88[EUR][1000 genomes]
rs72676712	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11207272	TACSTD2	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59060600-59082200	Weak transcription	HUVEC	blood vessel
2	chr1:59061200-59074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:59062600-59074600	Weak transcription	NHEK	skin
4	chr1:59062800-59074800	Weak transcription	HMEC	breast
5	chr1:59065200-59074800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:59067400-59074200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:59071400-59077400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:59072400-59074000	Weak transcription	Stomach Mucosa	stomach
9	chr1:59072800-59082800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:59073200-59075000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:59073400-59074800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:59073400-59077800	Weak transcription	Aorta	Aorta

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