Variant report

Variant	rs11582185
Chromosome Location	chr1:59084143-59084144
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59038340..59044469-chr1:59083826..59091142,23	MCF-7	breast:
2	chr1:59071669..59073379-chr1:59082201..59084764,2	MCF-7	breast:
3	chr1:59076652..59078181-chr1:59082162..59085027,2	K562	blood:
4	chr1:59058111..59061332-chr1:59083852..59086894,4	MCF-7	breast:
5	chr1:59083668..59085660-chr1:59115397..59118343,2	MCF-7	breast:
6	chr1:59076652..59078644-chr1:59083527..59085617,2	K562	blood:
7	chr1:59076612..59079403-chr1:59083329..59085005,2	MCF-7	breast:
8	chr1:59037398..59045393-chr1:59081504..59088877,36	MCF-7	breast:
9	chr1:59048457..59052619-chr1:59081708..59087602,8	MCF-7	breast:
10	chr1:59047843..59052771-chr1:59082760..59087529,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184292	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10157697	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10465804	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11207272	0.88[EUR][1000 genomes]
rs11576450	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11578449	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11578722	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11578726	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11579447	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11580213	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11581243	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11584050	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11584589	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11587264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11590060	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11811483	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11811899	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12562546	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12564701	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12565004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12566630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12567616	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13374003	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13375494	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13375496	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1492719	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2273045	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs232910	0.80[ASN][1000 genomes]
rs232911	0.80[ASN][1000 genomes]
rs2407019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34204484	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35584156	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36084158	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55742964	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56011712	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56097207	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57043686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57166198	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57925801	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58488453	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58575274	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58626572	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59450768	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59469255	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59590779	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60217618	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60382465	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60698357	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60869327	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61070091	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61203902	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61552468	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661394	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661513	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661551	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661592	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661808	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6661896	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6661969	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6686203	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72674199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72676705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72676710	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72676712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676714	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676715	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676717	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676720	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676723	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676724	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676726	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676729	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676731	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59082400-59084800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:59082400-59087200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:59082600-59084800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr1:59082600-59085800	Enhancers	HMEC	breast
5	chr1:59082600-59087600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:59082800-59084200	Weak transcription	Esophagus	oesophagus
7	chr1:59082800-59084200	Enhancers	NHEK	skin
8	chr1:59082800-59084800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:59082800-59087600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:59083000-59085200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:59083000-59086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:59083200-59086000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:59083200-59087000	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:59083200-59088000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:59083400-59084600	Enhancers	NHDF-Ad	bronchial
16	chr1:59083400-59085200	Enhancers	HSMM	muscle
17	chr1:59083400-59085400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:59083400-59085400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:59083400-59085400	Enhancers	HSMMtube	muscle
20	chr1:59083600-59084800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:59083600-59085200	Enhancers	Osteobl	bone
22	chr1:59083600-59085400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:59083600-59085600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:59083600-59085600	Enhancers	Colon Smooth Muscle	Colon
25	chr1:59083600-59087600	Enhancers	Stomach Mucosa	stomach
26	chr1:59083800-59084200	Enhancers	Duodenum Mucosa	Duodenum
27	chr1:59083800-59084600	Flanking Active TSS	HUVEC	blood vessel
28	chr1:59083800-59085200	Enhancers	Aorta	Aorta
29	chr1:59083800-59085200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr1:59083800-59085400	Enhancers	Hela-S3	cervix
31	chr1:59083800-59085400	Enhancers	NH-A	brain
32	chr1:59083800-59085600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:59084000-59084200	Enhancers	Gastric	stomach
34	chr1:59084000-59084400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:59084000-59084400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:59084000-59084400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:59084000-59084400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr1:59084000-59084400	Enhancers	Right Ventricle	heart
39	chr1:59084000-59085400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr1:59084000-59085600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr1:59084000-59085600	Enhancers	Psoas Muscle	Psoas
42	chr1:59084000-59085800	Enhancers	Left Ventricle	heart
43	chr1:59084000-59086000	Enhancers	Adipose Nuclei	Adipose
44	chr1:59084000-59086200	Enhancers	Primary T cells from cord blood	blood
45	chr1:59084000-59087000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:59084000-59087600	Enhancers	Lung	lung

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