Variant report

Variant	rs72676712
Chromosome Location	chr1:59083656-59083657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59071669..59073379-chr1:59082201..59084764,2	MCF-7	breast:
2	chr1:59076652..59078181-chr1:59082162..59085027,2	K562	blood:
3	chr1:59076652..59078644-chr1:59083527..59085617,2	K562	blood:
4	chr1:59082041..59083962-chr1:59243865..59246416,2	K562	blood:
5	chr1:59064217..59065822-chr1:59082414..59084077,2	MCF-7	breast:
6	chr1:59076612..59079403-chr1:59083329..59085005,2	MCF-7	breast:
7	chr1:59037398..59045393-chr1:59081504..59088877,36	MCF-7	breast:
8	chr1:59048457..59052619-chr1:59081708..59087602,8	MCF-7	breast:
9	chr1:59047843..59052771-chr1:59082760..59087529,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184292	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10157697	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10465804	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11207272	0.88[EUR][1000 genomes]
rs11576450	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11578449	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11578722	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11578726	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11579447	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11580213	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11581243	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11582185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584050	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11584589	0.93[EUR][1000 genomes]
rs11587264	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11590060	0.81[EUR][1000 genomes]
rs11811483	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11811899	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12562546	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12564701	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12565004	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12566630	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12567616	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13374003	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13375494	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13375496	0.83[EUR][1000 genomes]
rs1492719	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372453	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2273045	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs232910	0.80[ASN][1000 genomes]
rs232911	0.80[ASN][1000 genomes]
rs2407019	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34204484	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35584156	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36084158	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55742964	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56011712	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56097207	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57043686	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57166198	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57925801	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58488453	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58575274	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58626572	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59450768	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59469255	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59590779	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60217618	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60382465	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60698357	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60869327	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61070091	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61203902	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61552468	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661394	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661513	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661551	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661592	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6661808	0.90[EUR][1000 genomes]
rs6661896	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6661969	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6686203	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72674199	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72676705	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72676710	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72676714	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676715	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676717	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676720	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676723	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676724	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676726	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676729	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72676731	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59078800-59083800	Weak transcription	Aorta	Aorta
2	chr1:59082200-59083800	Enhancers	HUVEC	blood vessel
3	chr1:59082400-59084800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:59082400-59087200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:59082600-59084000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:59082600-59084800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:59082600-59085800	Enhancers	HMEC	breast
8	chr1:59082600-59087600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:59082800-59084200	Weak transcription	Esophagus	oesophagus
10	chr1:59082800-59084200	Enhancers	NHEK	skin
11	chr1:59082800-59084800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:59082800-59087600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:59083000-59084000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:59083000-59085200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:59083000-59086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:59083200-59084000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:59083200-59086000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:59083200-59087000	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:59083200-59088000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:59083400-59084600	Enhancers	NHDF-Ad	bronchial
21	chr1:59083400-59085200	Enhancers	HSMM	muscle
22	chr1:59083400-59085400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:59083400-59085400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:59083400-59085400	Enhancers	HSMMtube	muscle
25	chr1:59083600-59084800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:59083600-59085200	Enhancers	Osteobl	bone
27	chr1:59083600-59085400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr1:59083600-59085600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:59083600-59085600	Enhancers	Colon Smooth Muscle	Colon
30	chr1:59083600-59087600	Enhancers	Stomach Mucosa	stomach

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