Variant report

Variant	rs72676710
Chromosome Location	chr1:59082956-59082957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59071669..59073379-chr1:59082201..59084764,2	MCF-7	breast:
2	chr1:59076652..59078181-chr1:59082162..59085027,2	K562	blood:
3	chr1:59041575..59044453-chr1:59080317..59083099,3	MCF-7	breast:
4	chr1:59082041..59083962-chr1:59243865..59246416,2	K562	blood:
5	chr1:59064217..59065822-chr1:59082414..59084077,2	MCF-7	breast:
6	chr1:59037398..59045393-chr1:59081504..59088877,36	MCF-7	breast:
7	chr1:59048457..59052619-chr1:59081708..59087602,8	MCF-7	breast:
8	chr1:59047843..59052771-chr1:59082760..59087529,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184292	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10157697	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10465804	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11207272	0.88[EUR][1000 genomes]
rs11576450	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11578449	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11578722	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11578726	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11579447	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11580213	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11581243	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11582185	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11584050	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11584589	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11587264	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11590060	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11811483	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11811899	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12562546	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12564701	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12565004	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12566630	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12567616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13374003	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13375494	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13375496	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1492719	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17372453	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273045	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2407019	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34204484	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35584156	0.87[EUR][1000 genomes]
rs36084158	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55742964	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56011712	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56097207	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57043686	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57166198	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57925801	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58488453	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58575274	0.84[EUR][1000 genomes]
rs58626572	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59450768	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59469255	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59590779	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60217618	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60382465	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60698357	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60869327	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61070091	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61203902	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61552468	0.90[EUR][1000 genomes]
rs6661394	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6661513	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6661551	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6661592	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6661808	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6661896	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6661969	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6686203	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72674199	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72676705	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72676712	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72676714	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72676715	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676717	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676720	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676723	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676724	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676726	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676729	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72676731	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59077800-59083200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:59078200-59083600	Weak transcription	Stomach Mucosa	stomach
3	chr1:59078400-59083000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:59078800-59083800	Weak transcription	Aorta	Aorta
5	chr1:59082200-59083800	Enhancers	HUVEC	blood vessel
6	chr1:59082400-59084800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:59082400-59087200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:59082600-59083000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:59082600-59084000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:59082600-59084800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:59082600-59085800	Enhancers	HMEC	breast
12	chr1:59082600-59087600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:59082800-59084200	Weak transcription	Esophagus	oesophagus
14	chr1:59082800-59084200	Enhancers	NHEK	skin
15	chr1:59082800-59084800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:59082800-59087600	Enhancers	Primary neutrophils fromperipheralblood	blood

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