Variant report

Variant	rs11208904
Chromosome Location	chr1:67009377-67009378
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67008052..67009564-chr1:67023947..67025718,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10493410	0.89[AMR][1000 genomes]
rs11208905	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11208909	0.82[AMR][1000 genomes]
rs1159852	0.82[AMR][1000 genomes]
rs11799970	0.82[AMR][1000 genomes]
rs11806387	0.85[AMR][1000 genomes]
rs12024358	0.80[ASN][1000 genomes]
rs12041078	0.82[AMR][1000 genomes]
rs12121959	0.82[AMR][1000 genomes]
rs12124690	0.86[AMR][1000 genomes]
rs12125455	0.82[AMR][1000 genomes]
rs12128429	0.82[AMR][1000 genomes]
rs12128496	0.81[AMR][1000 genomes]
rs12131909	0.82[AMR][1000 genomes]
rs12135213	0.80[ASN][1000 genomes]
rs12725322	0.83[AMR][1000 genomes]
rs12731104	0.82[AMR][1000 genomes]
rs12731112	0.82[AMR][1000 genomes]
rs12741427	0.82[AMR][1000 genomes]
rs12749728	0.80[ASN][1000 genomes]
rs12750223	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12751879	0.82[AMR][1000 genomes]
rs1373910	0.82[AMR][1000 genomes]
rs1975523	0.82[AMR][1000 genomes]
rs2121041	0.82[AMR][1000 genomes]
rs2121053	0.80[ASN][1000 genomes]
rs2121054	0.80[ASN][1000 genomes]
rs2218498	0.82[AMR][1000 genomes]
rs35652756	0.81[ASN][1000 genomes]
rs4655496	0.82[AMR][1000 genomes]
rs4655497	0.82[AMR][1000 genomes]
rs4655619	0.83[AMR][1000 genomes]
rs4655621	0.83[AMR][1000 genomes]
rs4655622	0.81[AMR][1000 genomes]
rs4655623	0.81[AMR][1000 genomes]
rs4655624	0.82[AMR][1000 genomes]
rs4655626	0.82[AMR][1000 genomes]
rs7547570	0.81[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs967323	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
4	chr1:67001600-67011000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:67002000-67010600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
7	chr1:67004200-67009600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
9	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
10	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
11	chr1:67005400-67012200	Enhancers	Brain Angular Gyrus	brain
12	chr1:67005800-67010600	Weak transcription	Fetal Brain Female	brain
13	chr1:67006000-67011000	Enhancers	HUVEC	blood vessel
14	chr1:67006400-67011200	Weak transcription	Fetal Brain Male	brain
15	chr1:67006800-67012000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:67007000-67011400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:67007200-67010600	Weak transcription	Aorta	Aorta
19	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:67007800-67012400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:67008000-67009600	Enhancers	Pancreas	Pancrea
22	chr1:67008000-67012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:67008200-67009400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr1:67008200-67010200	Enhancers	Hela-S3	cervix
25	chr1:67008400-67009400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:67008400-67009400	Enhancers	Fetal Intestine Large	intestine
27	chr1:67008400-67009600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:67008400-67009600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:67008400-67009600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:67008400-67009600	Enhancers	Fetal Intestine Small	intestine
31	chr1:67008400-67010000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:67008400-67010200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr1:67008400-67010600	Enhancers	NHLF	lung
34	chr1:67008400-67010800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:67008400-67018000	Weak transcription	Lung	lung
36	chr1:67008600-67009400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
37	chr1:67008600-67009600	Enhancers	Fetal Lung	lung
38	chr1:67008600-67010000	Enhancers	NH-A	brain
39	chr1:67008600-67011200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr1:67008600-67011200	Enhancers	Brain Anterior Caudate	brain
41	chr1:67008600-67012600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:67008600-67013000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:67008800-67009400	Enhancers	Stomach Mucosa	stomach
44	chr1:67008800-67009600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr1:67008800-67009600	Enhancers	HMEC	breast
46	chr1:67008800-67009800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:67008800-67010000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:67008800-67010000	Enhancers	Liver	Liver
49	chr1:67008800-67010000	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr1:67008800-67010200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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