Variant report

Variant	rs11211514
Chromosome Location	chr1:47787954-47787955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489596	0.87[ASN][1000 genomes]
rs11211503	0.91[ASN][1000 genomes]
rs12081669	0.85[ASN][1000 genomes]
rs12084661	0.84[ASN][1000 genomes]
rs12090346	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17103075	0.91[ASN][1000 genomes]
rs17103186	0.82[ASN][1000 genomes]
rs2475761	0.87[ASN][1000 genomes]
rs2494245	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2622922	0.82[ASN][1000 genomes]
rs2622923	0.86[ASN][1000 genomes]
rs2742080	0.91[ASN][1000 genomes]
rs2758741	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2821095	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3122618	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3125626	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3125634	0.83[ASN][1000 genomes]
rs7532785	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9436412	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9436883	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390574	chr1:47778981-47803091	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47780200-47798400	Weak transcription	Spleen	Spleen
2	chr1:47780600-47798000	Weak transcription	HSMMtube	muscle
3	chr1:47780800-47789200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:47780800-47791200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:47780800-47797800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:47786400-47788800	Weak transcription	K562	blood
7	chr1:47787200-47788400	Enhancers	Duodenum Mucosa	Duodenum
8	chr1:47787200-47790800	Enhancers	Stomach Mucosa	stomach
9	chr1:47787600-47788200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr1:47787800-47789600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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