Variant report

Variant	rs17103075
Chromosome Location	chr1:47755316-47755317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47744627..47746467-chr1:47754949..47756563,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211503	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211514	0.91[ASN][1000 genomes]
rs12081669	0.90[ASN][1000 genomes]
rs12084661	0.89[ASN][1000 genomes]
rs12090153	1.00[YRI][hapmap]
rs12090346	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17103186	0.86[ASN][1000 genomes]
rs2475761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494245	0.91[ASN][1000 genomes]
rs2622922	0.87[ASN][1000 genomes]
rs2622923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2742080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122618	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3125626	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9436412	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436883	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47714400-47779200	Weak transcription	Small Intestine	intestine
4	chr1:47714600-47778400	Weak transcription	Fetal Heart	heart
5	chr1:47716600-47772600	Strong transcription	Dnd41	blood
6	chr1:47720400-47757000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:47720600-47766400	Weak transcription	Brain Germinal Matrix	brain
8	chr1:47721600-47766800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:47723400-47772400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:47729000-47767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:47730400-47770200	Weak transcription	Colonic Mucosa	Colon
12	chr1:47730800-47766400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:47731400-47778000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:47735400-47779000	Weak transcription	Esophagus	oesophagus
15	chr1:47740400-47757200	Weak transcription	Gastric	stomach
16	chr1:47741400-47771400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:47741600-47770800	Strong transcription	Fetal Thymus	thymus
18	chr1:47741800-47770800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:47742600-47773000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:47742600-47773000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:47742800-47757000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:47742800-47763800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:47743800-47766400	Weak transcription	Fetal Kidney	kidney
24	chr1:47743800-47779200	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:47744200-47779000	Weak transcription	Brain Angular Gyrus	brain
26	chr1:47744400-47779000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:47744800-47779000	Weak transcription	HSMMtube	muscle
28	chr1:47745000-47762000	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr1:47746200-47772000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:47746200-47778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:47746400-47758200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:47746600-47758000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr1:47746600-47765400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr1:47746600-47772200	Weak transcription	Ovary	ovary
35	chr1:47746600-47776400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:47746600-47778400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:47746600-47778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:47746600-47778400	Weak transcription	Fetal Brain Female	brain
39	chr1:47746800-47756400	Weak transcription	HMEC	breast
40	chr1:47746800-47766400	Weak transcription	NHLF	lung
41	chr1:47746800-47766600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:47746800-47768800	Weak transcription	Aorta	Aorta
43	chr1:47746800-47778800	Weak transcription	Placenta	Placenta
44	chr1:47749000-47757800	Strong transcription	Fetal Stomach	stomach
45	chr1:47749200-47765400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:47749400-47758800	Weak transcription	NH-A	brain
47	chr1:47749400-47765200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:47749400-47765400	Weak transcription	NHDF-Ad	bronchial
49	chr1:47749400-47766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr1:47749600-47760200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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