Variant report

Variant	rs9436412
Chromosome Location	chr1:47766604-47766605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:47745746..47747792-chr1:47765505..47768331,2	MCF-7	breast:
2	chr1:47766106..47769522-chr1:47770761..47774042,5	K562	blood:
3	chr1:47766511..47768072-chr1:47777921..47779885,2	K562	blood:

Variant related genes	Relation type
ENSG00000123473	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211503	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211514	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12081669	0.90[ASN][1000 genomes]
rs12084661	0.89[ASN][1000 genomes]
rs12090153	1.00[YRI][hapmap]
rs12090346	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17103075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103186	0.86[ASN][1000 genomes]
rs2475761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494245	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2622922	0.87[ASN][1000 genomes]
rs2622923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2742080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821095	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122618	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3125626	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9436883	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47714400-47779200	Weak transcription	Small Intestine	intestine
2	chr1:47714600-47778400	Weak transcription	Fetal Heart	heart
3	chr1:47716600-47772600	Strong transcription	Dnd41	blood
4	chr1:47721600-47766800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:47723400-47772400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:47729000-47767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:47730400-47770200	Weak transcription	Colonic Mucosa	Colon
8	chr1:47731400-47778000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:47735400-47779000	Weak transcription	Esophagus	oesophagus
10	chr1:47741400-47771400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:47741600-47770800	Strong transcription	Fetal Thymus	thymus
12	chr1:47741800-47770800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:47742600-47773000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:47742600-47773000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:47743800-47779200	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:47744200-47779000	Weak transcription	Brain Angular Gyrus	brain
17	chr1:47744400-47779000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:47744800-47779000	Weak transcription	HSMMtube	muscle
19	chr1:47746200-47772000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:47746200-47778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:47746600-47772200	Weak transcription	Ovary	ovary
22	chr1:47746600-47776400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:47746600-47778400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:47746600-47778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:47746600-47778400	Weak transcription	Fetal Brain Female	brain
26	chr1:47746800-47768800	Weak transcription	Aorta	Aorta
27	chr1:47746800-47778800	Weak transcription	Placenta	Placenta
28	chr1:47749600-47777800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:47750000-47779200	Weak transcription	Right Atrium	heart
30	chr1:47755200-47779000	Weak transcription	Primary B cells from cord blood	blood
31	chr1:47755400-47778800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr1:47755600-47767000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:47755600-47767200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr1:47756600-47768400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr1:47757400-47773000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:47757800-47771400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr1:47758000-47771000	Strong transcription	K562	blood
38	chr1:47760000-47772600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:47760200-47767000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:47760800-47770600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:47762200-47768200	Strong transcription	Fetal Stomach	stomach
42	chr1:47762400-47768400	Strong transcription	GM12878-XiMat	blood
43	chr1:47762400-47768400	Strong transcription	HMEC	breast
44	chr1:47763200-47769600	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr1:47763400-47768000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr1:47763400-47778600	Weak transcription	Adipose Nuclei	Adipose
47	chr1:47763600-47779000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr1:47763600-47779200	Weak transcription	Fetal Brain Male	brain
49	chr1:47764200-47770800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:47764200-47779000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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