Variant report

Variant	rs3125626
Chromosome Location	chr1:47757824-47757825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:47755819..47758720-chr1:47758998..47762198,3	MCF-7	breast:
2	chr1:47755617..47758082-chr1:47778276..47780290,2	K562	blood:
3	chr1:47695202..47698000-chr1:47756619..47759541,2	K562	blood:
4	chr1:47752784..47754896-chr1:47756720..47759592,2	K562	blood:
5	chr1:47755816..47759455-chr1:47777842..47780086,4	K562	blood:

Variant related genes	Relation type
ENSG00000123473	Chromatin interaction
ENSG00000162367	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489596	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211503	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211514	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12081669	0.90[ASN][1000 genomes]
rs12084661	0.89[ASN][1000 genomes]
rs12090346	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17103075	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103186	0.86[ASN][1000 genomes]
rs2475761	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494245	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2622922	0.87[ASN][1000 genomes]
rs2622923	0.91[ASN][1000 genomes]
rs2742080	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821095	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122618	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7532785	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9436412	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436883	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47714400-47779200	Weak transcription	Small Intestine	intestine
4	chr1:47714600-47778400	Weak transcription	Fetal Heart	heart
5	chr1:47716600-47772600	Strong transcription	Dnd41	blood
6	chr1:47720600-47766400	Weak transcription	Brain Germinal Matrix	brain
7	chr1:47721600-47766800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:47723400-47772400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:47729000-47767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:47730400-47770200	Weak transcription	Colonic Mucosa	Colon
11	chr1:47730800-47766400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:47731400-47778000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:47735400-47779000	Weak transcription	Esophagus	oesophagus
14	chr1:47741400-47771400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:47741600-47770800	Strong transcription	Fetal Thymus	thymus
16	chr1:47741800-47770800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:47742600-47773000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:47742600-47773000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:47742800-47763800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:47743800-47766400	Weak transcription	Fetal Kidney	kidney
21	chr1:47743800-47779200	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:47744200-47779000	Weak transcription	Brain Angular Gyrus	brain
23	chr1:47744400-47779000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:47744800-47779000	Weak transcription	HSMMtube	muscle
25	chr1:47745000-47762000	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr1:47746200-47772000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:47746200-47778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:47746400-47758200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:47746600-47758000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr1:47746600-47765400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:47746600-47772200	Weak transcription	Ovary	ovary
32	chr1:47746600-47776400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:47746600-47778400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:47746600-47778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:47746600-47778400	Weak transcription	Fetal Brain Female	brain
36	chr1:47746800-47766400	Weak transcription	NHLF	lung
37	chr1:47746800-47766600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:47746800-47768800	Weak transcription	Aorta	Aorta
39	chr1:47746800-47778800	Weak transcription	Placenta	Placenta
40	chr1:47749200-47765400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:47749400-47758800	Weak transcription	NH-A	brain
42	chr1:47749400-47765200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr1:47749400-47765400	Weak transcription	NHDF-Ad	bronchial
44	chr1:47749400-47766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr1:47749600-47760200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:47749600-47763200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:47749600-47766400	Weak transcription	A549	lung
48	chr1:47749600-47777800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:47750000-47779200	Weak transcription	Right Atrium	heart
50	chr1:47751000-47766600	Weak transcription	Rectal Mucosa Donor 31	rectum

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