Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10789943	0.85[ASN][1000 genomes]
rs10789944	0.88[ASN][1000 genomes]
rs10789945	0.93[ASN][1000 genomes]
rs10891550	0.81[ASN][1000 genomes]
rs10891551	0.85[ASN][1000 genomes]
rs10891552	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10891565	0.93[ASN][1000 genomes]
rs10891566	0.81[ASN][1000 genomes]
rs10891567	0.81[ASN][1000 genomes]
rs11214611	0.85[ASN][1000 genomes]
rs11214633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11214635	0.93[ASN][1000 genomes]
rs12421616	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2002228	0.93[ASN][1000 genomes]
rs2002229	0.93[ASN][1000 genomes]
rs4245149	0.87[ASN][1000 genomes]
rs4350392	0.87[ASN][1000 genomes]
rs4447205	0.93[ASN][1000 genomes]
rs4548655	0.93[ASN][1000 genomes]
rs4648317	0.85[ASN][1000 genomes]
rs4938019	0.88[ASN][1000 genomes]
rs4938026	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55887984	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7117915	0.87[ASN][1000 genomes]
rs7122454	0.81[ASN][1000 genomes]
rs7479729	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113374800-113379400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:113376800-113380200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:113377200-113380600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:113377400-113380200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:113377400-113380200	Weak transcription	NHEK	skin
6	chr11:113378600-113379600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:113378600-113379600	Weak transcription	HMEC	breast

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