Variant report
Variant | rs11214633 |
---|---|
Chromosome Location | chr11:113382519-113382520 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:113380056..113382967-chr11:113385167..113387054,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10789943 | 0.87[ASN][1000 genomes] |
rs10789944 | 0.89[ASN][1000 genomes] |
rs10789945 | 0.94[ASN][1000 genomes] |
rs10891550 | 0.83[ASN][1000 genomes] |
rs10891551 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10891552 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10891565 | 0.94[ASN][1000 genomes] |
rs10891566 | 0.83[ASN][1000 genomes] |
rs10891567 | 0.83[ASN][1000 genomes] |
rs10891568 | 0.81[ASN][1000 genomes] |
rs11214611 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11214632 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11214635 | 0.94[ASN][1000 genomes] |
rs12421616 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2002228 | 0.94[ASN][1000 genomes] |
rs2002229 | 0.94[ASN][1000 genomes] |
rs4245149 | 0.89[ASN][1000 genomes] |
rs4350392 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs4447205 | 0.94[ASN][1000 genomes] |
rs4548655 | 0.94[ASN][1000 genomes] |
rs4648317 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4938019 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs4938026 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55887984 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7117915 | 0.89[ASN][1000 genomes] |
rs7122454 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs7479729 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv556444 | chr11:113234432-113383394 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:113381200-113385400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr11:113381400-113385400 | Weak transcription | HMEC | breast |