Variant report

Variant	rs11218408
Chromosome Location	chr11:121674233-121674234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10219211	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11218409	0.82[ASN][1000 genomes]
rs11218414	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11218415	0.86[AMR][1000 genomes]
rs11218416	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11218435	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12276466	0.82[ASN][1000 genomes]
rs12277681	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28378150	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121670400-121675200	Enhancers	Fetal Stomach	stomach
2	chr11:121670600-121674400	Enhancers	Fetal Muscle Leg	muscle
3	chr11:121670800-121674400	Enhancers	Fetal Kidney	kidney
4	chr11:121671000-121674400	Enhancers	Fetal Lung	lung
5	chr11:121671000-121675000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:121671800-121680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:121672200-121674400	Enhancers	Ovary	ovary
8	chr11:121672200-121679600	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:121672400-121674400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:121672600-121674400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:121673000-121674400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:121673400-121674400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:121673400-121674400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:121673400-121674400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:121673400-121674400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:121673400-121674400	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:121673400-121674800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:121673600-121674400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:121673600-121674600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:121673800-121679400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:121674000-121678800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:121674200-121678400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:121674200-121679000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links