Variant report

Variant	rs11218476
Chromosome Location	chr11:121823789-121823790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10219348	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10892786	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11218466	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11218469	0.80[EUR][1000 genomes]
rs11218470	0.80[EUR][1000 genomes]
rs11218477	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11605389	0.82[EUR][1000 genomes]
rs11607848	0.80[EUR][1000 genomes]
rs12281908	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12290901	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12294692	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1448130	0.82[EUR][1000 genomes]
rs1448131	0.82[EUR][1000 genomes]
rs59708244	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7926154	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556478	chr11:121816920-121840829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11218476	PKNOX2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121822800-121824200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:121822800-121825000	Enhancers	Liver	Liver
3	chr11:121823000-121824200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:121823400-121824200	Enhancers	Brain Substantia Nigra	brain
5	chr11:121823600-121824000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:121823600-121824400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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