Variant report

Variant	rs11218477
Chromosome Location	chr11:121824701-121824702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10219348	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10892786	0.95[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11218466	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11218469	0.82[EUR][1000 genomes]
rs11218470	0.82[EUR][1000 genomes]
rs11218476	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11605389	0.85[EUR][1000 genomes]
rs11607848	0.82[EUR][1000 genomes]
rs1219434	0.87[EUR][1000 genomes]
rs12281908	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12290901	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12294692	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1448130	0.84[EUR][1000 genomes]
rs1448131	0.84[EUR][1000 genomes]
rs59708244	0.95[AMR][1000 genomes]
rs7926154	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556478	chr11:121816920-121840829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121822800-121825000	Enhancers	Liver	Liver
2	chr11:121824000-121832000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:121824200-121829400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:121824200-121829600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:121824200-121831800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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