Variant report

Variant	rs1448130
Chromosome Location	chr11:121815423-121815424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10219348	0.84[EUR][1000 genomes]
rs11218469	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11218470	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11218476	0.82[EUR][1000 genomes]
rs11218477	0.84[EUR][1000 genomes]
rs11605389	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11607848	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1219431	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1219432	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1219433	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1219434	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1219450	0.93[ASN][1000 genomes]
rs1219454	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1219458	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1219460	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12290901	0.82[EUR][1000 genomes]
rs12294692	0.82[EUR][1000 genomes]
rs1235044	0.82[AMR][1000 genomes]
rs1448131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448132	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448133	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1789735	0.82[AMR][1000 genomes]
rs1789750	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925712	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926019	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926154	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1448130	PKNOX2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121812000-121817200	Weak transcription	Left Ventricle	heart
2	chr11:121814400-121816400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:121815200-121816000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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