Variant report

Variant	rs1219431
Chromosome Location	chr11:121823204-121823205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121822688..121824829-chr11:121928249..121930880,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11218469	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218470	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11218472	0.87[AFR][1000 genomes]
rs11605389	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11607848	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1219432	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1219433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1219434	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1219450	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1219454	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1219458	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1219460	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1231185	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1375013	0.87[AFR][1000 genomes]
rs1375014	0.88[AFR][1000 genomes]
rs1448130	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448131	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448132	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448133	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1789750	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4016823	0.90[AFR][1000 genomes]
rs7925712	0.88[ASN][1000 genomes]
rs7926019	0.88[ASN][1000 genomes]
rs7934592	0.89[AFR][1000 genomes]
rs7937893	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556478	chr11:121816920-121840829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121821600-121823600	Weak transcription	HepG2	liver
2	chr11:121822800-121824200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:121822800-121825000	Enhancers	Liver	Liver
4	chr11:121823000-121824200	Enhancers	Cortex derived primary cultured neurospheres	brain

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