Variant report

Variant	rs1219454
Chromosome Location	chr11:121808528-121808529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11218469	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11218470	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218472	0.82[AFR][1000 genomes]
rs11605389	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11607848	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1219431	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1219432	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1219433	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1219434	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1219450	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1219458	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1219460	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1375013	0.85[AFR][1000 genomes]
rs1375014	0.81[AFR][1000 genomes]
rs1448130	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448131	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448132	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448133	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1789750	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4016823	0.83[AFR][1000 genomes]
rs7925712	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926019	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934592	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3354123	chr11:121807392-121809440	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121801400-121813000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:121804000-121808800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121805800-121809200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:121805800-121809200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:121805800-121809400	Enhancers	HMEC	breast
6	chr11:121806000-121809600	Enhancers	NHDF-Ad	bronchial
7	chr11:121806400-121809200	Enhancers	Osteobl	bone
8	chr11:121806400-121809400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:121806600-121809800	Enhancers	NHEK	skin
10	chr11:121807000-121809600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:121807200-121808800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:121807800-121809000	Enhancers	NH-A	brain
13	chr11:121807800-121809000	Enhancers	NHLF	lung
14	chr11:121807800-121809200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:121807800-121809600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:121807800-121812600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:121808400-121809600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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