Variant report

Variant	rs7934592
Chromosome Location	chr11:121810231-121810232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11218472	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1219431	0.89[AFR][1000 genomes]
rs1219432	0.86[AFR][1000 genomes]
rs1219433	0.89[AFR][1000 genomes]
rs1219454	0.84[AFR][1000 genomes]
rs1219460	0.87[AFR][1000 genomes]
rs1375013	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375014	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1448132	0.89[AFR][1000 genomes]
rs1448133	0.89[AFR][1000 genomes]
rs1789750	0.89[AFR][1000 genomes]
rs4016823	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61905478	0.96[ASN][1000 genomes]
rs7937893	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7934592	POU2F3	cis	parietal	SCAN
rs7934592	UPK2	cis	cerebellum	SCAN
rs7934592	BSX	cis	cerebellum	SCAN
rs7934592	SORL1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121801400-121813000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:121807800-121812600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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