Variant report

Variant	rs11224623
Chromosome Location	chr11:101059335-101059336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10466630	1.00[AMR][1000 genomes]
rs10466631	1.00[AMR][1000 genomes]
rs10466632	1.00[AMR][1000 genomes]
rs10466633	1.00[AMR][1000 genomes]
rs11224622	1.00[AMR][1000 genomes]
rs11224644	1.00[AMR][1000 genomes]
rs12270775	1.00[AMR][1000 genomes]
rs12279240	1.00[AMR][1000 genomes]
rs12280167	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281137	1.00[AMR][1000 genomes]
rs12284507	1.00[AMR][1000 genomes]
rs12287094	1.00[AMR][1000 genomes]
rs12289458	1.00[AMR][1000 genomes]
rs60766012	1.00[AMR][1000 genomes]
rs73579728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583806	1.00[AMR][1000 genomes]
rs73583818	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101054800-101071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101057800-101059600	Enhancers	Liver	Liver
4	chr11:101058000-101059600	Enhancers	Colon Smooth Muscle	Colon
5	chr11:101058000-101059600	Enhancers	Fetal Lung	lung
6	chr11:101058000-101059800	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:101059000-101059800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr11:101059000-101060000	Enhancers	Aorta	Aorta
9	chr11:101059200-101060400	Enhancers	Fetal Heart	heart
10	chr11:101059200-101060800	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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