Variant report

Variant	rs12280167
Chromosome Location	chr11:101058949-101058950
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10466630	1.00[AMR][1000 genomes]
rs10466631	1.00[AMR][1000 genomes]
rs10466632	1.00[AMR][1000 genomes]
rs10466633	1.00[AMR][1000 genomes]
rs11224622	1.00[AMR][1000 genomes]
rs11224623	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11224644	1.00[AMR][1000 genomes]
rs12270775	1.00[AMR][1000 genomes]
rs12279240	1.00[AMR][1000 genomes]
rs12281137	1.00[AMR][1000 genomes]
rs12284507	1.00[AMR][1000 genomes]
rs12287094	1.00[AMR][1000 genomes]
rs12289458	1.00[AMR][1000 genomes]
rs60766012	1.00[AMR][1000 genomes]
rs73579728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583806	1.00[AMR][1000 genomes]
rs73583818	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101052000-101059200	Weak transcription	Ovary	ovary
3	chr11:101054800-101071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101057800-101059600	Enhancers	Liver	Liver
5	chr11:101058000-101059600	Enhancers	Colon Smooth Muscle	Colon
6	chr11:101058000-101059600	Enhancers	Fetal Lung	lung
7	chr11:101058000-101059800	Enhancers	Rectal Smooth Muscle	rectum
8	chr11:101058400-101059000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr11:101058600-101059000	Active TSS	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links