Variant report

Variant	rs60766012
Chromosome Location	chr11:101112399-101112400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10466630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10466631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10466632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10466633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11224622	1.00[AMR][1000 genomes]
rs11224623	1.00[AMR][1000 genomes]
rs11224644	1.00[AMR][1000 genomes]
rs12270775	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280167	1.00[AMR][1000 genomes]
rs12281137	1.00[AMR][1000 genomes]
rs12284507	1.00[AMR][1000 genomes]
rs12287094	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289458	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579728	1.00[AMR][1000 genomes]
rs73583806	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583818	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101111800-101112600	ZNF genes & repeats	Pancreas	Pancrea
2	chr11:101112000-101112400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:101112000-101112400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:101112200-101112400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:101112200-101115600	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links