Variant report

Variant	rs11225045
Chromosome Location	chr11:101749553-101749554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10895203	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10895204	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10895209	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10895225	0.84[JPT][hapmap]
rs11225004	0.81[ASN][1000 genomes]
rs11225005	0.81[ASN][1000 genomes]
rs11225011	0.82[ASN][1000 genomes]
rs11225012	0.82[ASN][1000 genomes]
rs11225015	0.83[ASN][1000 genomes]
rs11225018	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225022	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11225023	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11225033	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11225034	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11225046	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225095	0.80[JPT][hapmap]
rs11602758	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363310	0.83[AMR][1000 genomes]
rs12364967	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365011	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577363	0.82[ASN][1000 genomes]
rs1441931	0.92[ASN][1000 genomes]
rs17685643	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1939034	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1939035	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1939038	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939053	0.81[ASN][1000 genomes]
rs1939055	0.83[ASN][1000 genomes]
rs1939065	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939067	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939068	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939458	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1946960	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119735	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165588	0.90[ASN][1000 genomes]
rs2165589	0.90[ASN][1000 genomes]
rs2897863	0.92[ASN][1000 genomes]
rs2897865	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4414186	0.83[ASN][1000 genomes]
rs4492786	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4548585	0.83[ASN][1000 genomes]
rs4575231	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754024	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754030	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754801	0.82[ASN][1000 genomes]
rs4754803	0.83[ASN][1000 genomes]
rs4754804	0.83[ASN][1000 genomes]
rs4754807	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754808	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754809	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754813	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55854918	0.82[ASN][1000 genomes]
rs57513630	0.81[ASN][1000 genomes]
rs61915969	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61915970	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123936	0.82[ASN][1000 genomes]
rs724569	0.92[ASN][1000 genomes]
rs7926957	0.92[ASN][1000 genomes]
rs7944493	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101742000-101750000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:101742200-101749600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:101749000-101750800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:101749400-101750200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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