Variant report

Variant	rs12364967
Chromosome Location	chr11:101736865-101736866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10895203	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10895204	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10895209	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11225004	0.80[ASN][1000 genomes]
rs11225005	0.80[ASN][1000 genomes]
rs11225011	0.81[ASN][1000 genomes]
rs11225012	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11225015	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225018	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11225019	0.83[ASN][1000 genomes]
rs11225022	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11225023	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11225033	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11225034	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11225045	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11225046	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602758	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365011	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12577363	0.85[ASN][1000 genomes]
rs1441931	0.89[ASN][1000 genomes]
rs17685643	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1893921	0.83[ASN][1000 genomes]
rs1939034	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1939035	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1939038	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1939053	0.80[ASN][1000 genomes]
rs1939055	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1939065	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1939067	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1939068	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1946960	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119735	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2165588	0.89[ASN][1000 genomes]
rs2165589	0.89[ASN][1000 genomes]
rs2897863	0.89[ASN][1000 genomes]
rs2897865	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4414186	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4429028	0.81[ASN][1000 genomes]
rs4492786	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539294	0.83[ASN][1000 genomes]
rs4548585	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4575231	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4754024	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4754030	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4754801	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754803	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754804	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754807	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4754808	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754809	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754813	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55854918	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57513630	0.82[ASN][1000 genomes]
rs61915969	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61915970	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7123936	0.85[ASN][1000 genomes]
rs724569	0.89[ASN][1000 genomes]
rs7926957	0.89[ASN][1000 genomes]
rs7944493	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430425	chr11:101626575-101741691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101731800-101738800	Enhancers	NHDF-Ad	bronchial
2	chr11:101734000-101737400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:101734000-101738600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:101734400-101737400	Weak transcription	NHEK	skin
5	chr11:101734600-101737400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:101734800-101737000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:101734800-101739600	Enhancers	Fetal Intestine Large	intestine
8	chr11:101735000-101737200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:101735600-101737200	Weak transcription	NH-A	brain
10	chr11:101735600-101737400	Weak transcription	Stomach Mucosa	stomach
11	chr11:101736000-101737000	Weak transcription	HUVEC	blood vessel
12	chr11:101736200-101739600	Enhancers	Fetal Intestine Small	intestine
13	chr11:101736400-101737400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:101736400-101739000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:101736400-101739000	Enhancers	NHLF	lung
16	chr11:101736600-101738000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:101736800-101737000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:101736800-101737000	Enhancers	A549	lung
19	chr11:101736800-101737800	Enhancers	HepG2	liver
20	chr11:101736800-101738000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:101736800-101738800	Enhancers	Liver	Liver
22	chr11:101736800-101739000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:101736800-101739000	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:101736800-101739200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:101736800-101739200	Enhancers	Hela-S3	cervix
26	chr11:101736800-101739200	Enhancers	Osteobl	bone

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