Variant report

Variant	rs7926957
Chromosome Location	chr11:101750148-101750149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10459002	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11225045	0.92[ASN][1000 genomes]
rs11225046	0.92[ASN][1000 genomes]
rs11602758	0.92[ASN][1000 genomes]
rs12364967	0.89[ASN][1000 genomes]
rs12577363	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1441931	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893921	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1946960	0.92[ASN][1000 genomes]
rs1954765	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2119735	0.92[ASN][1000 genomes]
rs2165588	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2165589	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2897863	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2897865	0.92[ASN][1000 genomes]
rs4429028	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4492786	0.89[ASN][1000 genomes]
rs4539294	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4754030	0.88[ASN][1000 genomes]
rs4754813	0.89[ASN][1000 genomes]
rs61915969	0.82[ASN][1000 genomes]
rs61915970	0.82[ASN][1000 genomes]
rs7123936	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724569	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7931237	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7944493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949648	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101749000-101750800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:101749400-101750200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:101749600-101751000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:101749800-101750800	Enhancers	NHDF-Ad	bronchial
5	chr11:101749800-101751600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:101750000-101750600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:101750000-101751000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:101750000-101751000	Enhancers	Hela-S3	cervix
9	chr11:101750000-101751400	Enhancers	Osteobl	bone

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