Variant report

Variant	rs4754030
Chromosome Location	chr11:101731689-101731690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101731243..101732246-chr11:101878260..101879259,5	MCF-7	breast:
2	chr11:101722861..101723655-chr11:101731427..101731999,2	MCF-7	breast:
3	chr11:101731437..101732505-chr11:101878341..101879203,3	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10895203	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10895204	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10895209	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895225	0.84[JPT][hapmap]
rs11225004	0.80[EUR][1000 genomes]
rs11225005	0.80[EUR][1000 genomes]
rs11225011	0.80[ASN][1000 genomes]
rs11225012	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11225015	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11225018	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225019	0.82[ASN][1000 genomes]
rs11225022	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11225023	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11225033	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11225034	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11225045	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11225046	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11225095	0.86[JPT][hapmap]
rs11602758	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12049892	0.81[JPT][hapmap]
rs12221779	0.80[JPT][hapmap]
rs12222135	0.81[JPT][hapmap]
rs12364967	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12365011	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577363	0.84[ASN][1000 genomes]
rs1441931	0.88[ASN][1000 genomes]
rs17685643	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1893921	0.82[ASN][1000 genomes]
rs1939034	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1939035	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1939038	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1939055	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939065	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1939067	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1939068	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1939458	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1946960	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119735	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2165588	0.88[ASN][1000 genomes]
rs2165589	0.88[ASN][1000 genomes]
rs2897863	0.88[ASN][1000 genomes]
rs2897865	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4414186	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4492786	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4503501	0.80[EUR][1000 genomes]
rs4539294	0.82[ASN][1000 genomes]
rs4548585	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4575231	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4754024	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754801	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4754803	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754804	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754807	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754808	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754809	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754813	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55854918	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57513630	0.81[ASN][1000 genomes]
rs61915969	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61915970	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123936	0.84[ASN][1000 genomes]
rs724569	0.88[ASN][1000 genomes]
rs7926957	0.88[ASN][1000 genomes]
rs7944493	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv898332	chr11:101562004-101732566	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv430425	chr11:101626575-101741691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101731400-101731800	Enhancers	A549	lung
2	chr11:101731400-101732000	Enhancers	Hela-S3	cervix
3	chr11:101731400-101732200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:101731400-101732200	Enhancers	Aorta	Aorta
5	chr11:101731400-101732200	Enhancers	Fetal Lung	lung
6	chr11:101731400-101732200	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:101731400-101734200	Enhancers	NHLF	lung
8	chr11:101731400-101735200	Enhancers	HepG2	liver
9	chr11:101731600-101733000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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