Variant report

Variant	rs11226158
Chromosome Location	chr11:103978127-103978128
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10502026	0.81[CHB][hapmap]
rs10502027	0.81[CHB][hapmap]
rs10502028	0.81[CHB][hapmap]
rs10502029	0.81[CHB][hapmap]
rs10895572	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10895573	0.81[ASN][1000 genomes]
rs10895575	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs10895584	0.81[CHB][hapmap]
rs10895585	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs11226161	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs11226162	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11226163	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs11226164	0.98[ASN][1000 genomes]
rs11226166	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs11226168	0.97[ASN][1000 genomes]
rs11226169	0.97[ASN][1000 genomes]
rs11226171	0.80[ASN][1000 genomes]
rs11226185	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs11226186	0.81[CHB][hapmap]
rs11226193	0.81[CHB][hapmap]
rs11226195	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs11226196	0.81[CHB][hapmap]
rs11226197	0.81[CHB][hapmap]
rs11226200	0.81[CHB][hapmap]
rs12223758	0.81[ASN][1000 genomes]
rs12224685	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs12224740	0.98[ASN][1000 genomes]
rs12224797	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12224814	0.81[CHB][hapmap]
rs12225070	0.89[ASN][1000 genomes]
rs12225071	0.89[ASN][1000 genomes]
rs12225994	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs12226274	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12273661	0.81[CHB][hapmap]
rs12277818	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12279801	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12280073	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12283349	0.90[YRI][hapmap]
rs12284612	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12284794	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12292979	0.86[ASW][hapmap]
rs12295533	0.88[ASN][1000 genomes]
rs1501456	0.81[CHB][hapmap]
rs1501457	0.81[CHB][hapmap]
rs17101978	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs17102060	0.87[CHB][hapmap]
rs361292	0.85[CHB][hapmap]
rs924561	0.81[CHB][hapmap];0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv826068	chr11:103959392-104003956	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1834487	chr11:103959760-104026977	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11226158	C5orf41	trans	brain	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:103971000-103981200	Weak transcription	Ovary	ovary
2	chr11:103976200-103992800	Weak transcription	Aorta	Aorta
3	chr11:103977200-103978200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:103977400-103978200	Enhancers	Left Ventricle	heart
5	chr11:103977400-103981200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:103977400-103981200	Weak transcription	Fetal Heart	heart
7	chr11:103977600-103980400	Weak transcription	Muscle Satellite Cultured Cells	--

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